About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41529892_41544158_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41529892 - 41544158
Intron Length:
14267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCATCCTCACAG
Flanking Amino Acid:
PRERSPKLAEVSASSDPRAA
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.8
0.74
0.7
77
25
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.4
-0.5
2
45.49
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045091
41525098 - 41545224
20127