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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41551648_41555732_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41551648 - 41555732
Intron Length:
4085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TATCCTGTGATC
Flanking Amino Acid:
AAHTKEMLDTALKEINEVGD
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
82.2
0.72
0.8
80.5
30.7
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
48.9
-0.1
2
63.48
36.5

Associated Gene:

Gene:
SPTLC2
Ensembl Gene ID:
ENSAPLG00000015435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016127
41550930 - 41609442
58513