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Intron Name: Anas_platyrhynchos_platyrhynchos_5_41557919_41588633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41557919 - 41588633

Intron Length:

30715

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAAGA

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CTTATCTTAATT

Flanking Amino Acid:

RSCLANQPNKGKECVQQLAE

Intron Amino Acid Position:

426

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

73.4

37.3

Major BPS

0.92

0.9

86.2

29.1

Major PPT

84.8

0.78

0.7

77.9

35.9

Minor 5ss

38.9

-1.2

2.8

49.3

46.5

Minor BPS

74.5

0.85

1.2

83.96

37.3

Associated Gene:

Gene:

SPTLC2

Ensembl Gene ID:

ENSAPLG00000015435

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016127

41550930 - 41609442

58513