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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41588697_41588812_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41588697 - 41588812
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TGTTACTTCATG
Flanking Amino Acid:
CIMGEDGTTFDFESLERQNN
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
74.6
0.55
0.9
70.8
34.8
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
54.2
-0
2
65.08
42.9

Associated Gene:

Gene:
SPTLC2
Ensembl Gene ID:
ENSAPLG00000015435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016127
41550930 - 41609442
58513