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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41588940_41590667_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41588940 - 41590667
Intron Length:
1728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACGC
5'SS Class:
major
3'SS Sequence:
TGTGTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTGTGTTTTACT
Flanking Amino Acid:
AAGGYIGGKKELIDYLRTYS
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.2
41.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
72.8
0.51
1
66.9
43.8
Minor 5ss
31.7
-2.1
3.2
42.6
44.3
Minor BPS
57
0.3
2.1
79.44
43

Associated Gene:

Gene:
SPTLC2
Ensembl Gene ID:
ENSAPLG00000015435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016127
41550930 - 41609442
58513