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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41590888_41591724_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41590888 - 41591724
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTTTCTCAACA
Flanking Amino Acid:
KILILVEGIYSMEGSIVRLP
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.6
38.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
84.9
0.79
0.8
81.9
28.6
Minor 5ss
34.4
-1.8
3.3
50.3
45.7
Minor BPS
78.1
0.88
1.4
87.43
30.3

Associated Gene:

Gene:
SPTLC2
Ensembl Gene ID:
ENSAPLG00000015435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016127
41550930 - 41609442
58513