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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41598867_41599195_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41598867 - 41599195
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTACTCTGAATT
Flanking Amino Acid:
AGVCSSRQEMGNLDKHEELE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.2
0.66
1
74.3
39.9
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
65
0.55
1.4
79.16
36.6

Associated Gene:

Gene:
SPTLC2
Ensembl Gene ID:
ENSAPLG00000015435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016127
41550930 - 41609442
58513