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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41599345_41600430_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41599345 - 41600430
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTAAAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
RVSHDYNWTFTYTGKVIKGI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.3
30.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.7
0.44
1
63.5
40.8
Minor 5ss
35.4
-1.7
2.8
39.2
39.9
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
SPTLC2
Ensembl Gene ID:
ENSAPLG00000015435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016127
41550930 - 41609442
58513