Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41633606_41636346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41633606 - 41636346

Intron Length:

2741

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGGCG

5'SS Class:

major

3'SS Sequence:

TTTCTTTTGCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

CTCCCTTTAACA

Flanking Amino Acid:

VLDFSAPGGQVFRSHLSISS

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

61.4

42.5

Major BPS

77.3

0.68

79.3

29.4

Major PPT

84.8

0.78

0.9

80.5

Minor 5ss

35.1

-1.7

3.5

47.6

Minor BPS

70.7

0.65

1.3

72.26

40.2

Associated Gene:

Gene:

ALKBH1

Ensembl Gene ID:

ENSAPLG00000015685

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034694

41628045 - 41636907

8863

ENSAPLT00000016356

41623633 - 41636907

13275