About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41644564_41644916_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41644564 - 41644916
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGTGG
5'SS Class:
major
3'SS Sequence:
CTTATATGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTCATTTTAACT
Flanking Amino Acid:
AEALYIADRKAREAVEMRAQ
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
61.3
45.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.9
0.56
1
68.8
41
Minor 5ss
31.5
-2.1
3.1
38.7
46.4
Minor BPS
67.4
0.63
1.3
76.69
40.1

Associated Gene:

Gene:
SNW1
Ensembl Gene ID:
ENSAPLG00000015739
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016450
41640023 - 41656041
16019