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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41647127_41647219_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41647127 - 41647219
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTACTTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTTTGTTACTT
Flanking Amino Acid:
QKDPMEPPRFKINKKIPRGP
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75.7
0.58
1
73.2
41.9
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
56.2
0.27
2.3
82.74
39.5

Associated Gene:

Gene:
SNW1
Ensembl Gene ID:
ENSAPLG00000015739
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016450
41640023 - 41656041
16019