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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41647325_41647921_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41647325 - 41647921
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCC
Flanking Amino Acid:
ADKLAPAQYIRYTPSQQGVA
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.3
37.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84
0.76
0.9
77.7
40.7
Minor 5ss
41.1
-1
3.1
60.5
44
Minor BPS
60.8
0.32
1.7
73.08
38.7

Associated Gene:

Gene:
SNW1
Ensembl Gene ID:
ENSAPLG00000015739
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016450
41640023 - 41656041
16019