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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41648029_41648120_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41648029 - 41648120
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCGTAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTTGATGAGG
Flanking Amino Acid:
QRPDEETIREITEKTRAALE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
59.2
42.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.9
0.85
0.7
85.6
29.1
Minor 5ss
47.7
-0.2
2.9
63.6
48.1
Minor BPS
40.7
-0.8
2.4
51.55
43.1

Associated Gene:

Gene:
SNW1
Ensembl Gene ID:
ENSAPLG00000015739
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016450
41640023 - 41656041
16019