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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41652391_41654857_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41652391 - 41654857
Intron Length:
2467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TCATTCACAACT
Flanking Amino Acid:
RKGWIPRVLEDFGDGGAFPE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
84.2
33.9
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
82.6
0.73
0.8
80.5
31.5
Minor 5ss
39.6
-1.2
3.3
59.2
45.4
Minor BPS
53.9
0.2
1.8
73.85
42.7

Associated Gene:

Gene:
SNW1
Ensembl Gene ID:
ENSAPLG00000015739
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016450
41640023 - 41656041
16019