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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41655012_41656027_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41655012 - 41656027
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TATGGATGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGGATGTACA
Flanking Amino Acid:
MALTSFLPAPTQLS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
71.6
40
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.8
0.36
1.1
57.9
46.3
Minor 5ss
30.3
-2.2
3.1
42.2
44.5
Minor BPS
39.5
-0.8
2.3
54.47
43.8

Associated Gene:

Gene:
SNW1
Ensembl Gene ID:
ENSAPLG00000015739
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016450
41640023 - 41656041
16019