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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41664743_41669255_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41664743 - 41669255
Intron Length:
4513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
GTTTAATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TCTGGTTTAATT
Flanking Amino Acid:
VVRVGRAIATTAVISYDYLT
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
80.8
0.69
0.9
74
40.3
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
58
0.33
1.9
74.65
43.4

Associated Gene:

Gene:
ADCK1
Ensembl Gene ID:
ENSAPLG00000016110
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016811
41664605 - 41739533
74929