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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41669340_41715199_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41669340 - 41715199
Intron Length:
45860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTTCCTGACAG
Flanking Amino Acid:
SEEYDSLKSQIKELFLSFED
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
79.9
0.67
0.9
76.4
32.3
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
57.1
0.09
1.9
69.82
43

Associated Gene:

Gene:
ADCK1
Ensembl Gene ID:
ENSAPLG00000016110
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016811
41664605 - 41739533
74929