Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41738288_41739361_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41738288 - 41739361

Intron Length:

1074

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTGTC

5'SS Class:

major

3'SS Sequence:

TCTCTCATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

TTTCTCTCATTC

Flanking Amino Acid:

MSRCCIRAVSTYQRSKSRSL

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

75.7

34.4

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

82.3

0.73

0.8

73.8

35.4

Minor 5ss

33.2

-1.9

3.3

42.7

Minor BPS

51.6

0.03

1.8

67.67

38.2

Associated Gene:

Gene:

ADCK1

Ensembl Gene ID:

ENSAPLG00000016110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029233

41664617 - 41739533

74917

ENSAPLT00000016811

41664605 - 41739533

74929