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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4178069_4178184_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4178069 - 4178184
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAG
U12 Branch Point Sequence:
GCGCCCCCAGCC
Flanking Amino Acid:
KFLRLMGAAKKEHTGRLVIG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
39.6
-0.6
1.7
46.5
47
Major PPT
75
0.56
0.9
69.1
36.9
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
40.6
-0.7
1.9
45.98
42.2

Associated Gene:

Gene:
C11orf58
Ensembl Gene ID:
ENSAPLG00000018784
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028246
4177658 - 4181220
3563