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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4191064_4192751_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
4191064 - 4192751
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TACTTCACGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTACTTCACG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
66.5
0.37
1
59.4
41.4
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
64.8
0.32
2
76.43
41

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036589
4190988 - 4322660
131673