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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4192861_4196110_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4192861 - 4196110
Intron Length:
3250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TGATCCCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TGCAGCCTAATT
Flanking Amino Acid:
EASQRSKEVAAQQLTFPPKA
Intron Amino Acid Position:
1283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
72
0.49
0.9
63
39.3
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
47.1
-0.1
2.1
66.06
44.6

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000036589
4190988 - 4322660
131673