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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4203396_4204003_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4203396 - 4204003
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTATGA
Flanking Amino Acid:
DSGYQTLPTRGLSGSTSRLH
Intron Amino Acid Position:
1044

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
61.5
44.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
1
79.6
31.6
Minor 5ss
37.4
-1.4
3.1
44.4
44.4
Minor BPS
64.4
0.45
1.9
78.76
38.3

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000036589
4190988 - 4322660
131673