Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42059728_42064247_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

42059728 - 42064247

Intron Length:

4520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGCAAC

5'SS Class:

major

3'SS Sequence:

AGAGGGAGACCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

CCTTTCTGAAGA

Flanking Amino Acid:

PSTADLPGSPIAQKHLGAQD

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

66.4

39.5

Major BPS

82.1

0.8

71.6

36.4

Major PPT

45.1

-0.2

1.1

40.8

Minor 5ss

41.9

-0.9

2.9

57.7

40.9

Minor BPS

53.3

0.1

1.8

63.1

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022669

42051237 - 42064334

13098