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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4209581_4210965_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4209581 - 4210965
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
CATTTGTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATCATAACAT
Flanking Amino Acid:
IRAEISKVSTEMENAWNEYL
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69.2
41.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.3
0.41
0.9
67.3
38.8
Minor 5ss
41
-1
3.2
58
46.6
Minor BPS
46.4
-0.1
2.2
71.4
44.9

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000036589
4190988 - 4322660
131673