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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4211116_4212057_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4211116 - 4212057
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TTTGCTGTAAAT
Flanking Amino Acid:
DKIRALKENKDQLESVLEVL
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
69.9
0.45
1
69.7
36.7
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
54.9
0.23
2.2
80.63
41.5

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000048066
4192752 - 4322660
129909