Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4212393_4214453_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4212393 - 4214453

Intron Length:

2061

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGACTG

5'SS Class:

major

3'SS Sequence:

CTTTTCCTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

AGATCTTTAAAA

Flanking Amino Acid:

SAQGLLSSIHVTGRDTLKER

Intron Amino Acid Position:

692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

68.4

42.4

Major BPS

73.1

0.58

79.6

29.1

Major PPT

82.2

0.72

0.7

81.3

23.7

Minor 5ss

-1.4

3.3

53.1

43.7

Minor BPS

66.5

0.51

1.3

69.07

36.4

Associated Gene:

Gene:

PLEKHA7

Ensembl Gene ID:

ENSAPLG00000008901

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042205

4192752 - 4322660

129909

ENSAPLT00000019707

4192752 - 4322660

129909

ENSAPLT00000009300

4192752 - 4279793

87042