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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4212393_4217401_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4212393 - 4217401
Intron Length:
5009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AGATCTTTAAAA
Flanking Amino Acid:
KKDLEYLDLKVTGRDTLKER
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
82.2
0.72
0.7
81.3
23.7
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
66.5
0.51
1.3
69.07
36.4

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000044368
4192752 - 4299103
106352