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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4217456_4219786_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4217456 - 4219786
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTACCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTCTATGTAATT
Flanking Amino Acid:
VSAPSLHGKSADDTYIQLKK
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
62.2
0.27
1.1
58.5
42
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
52.1
0.14
2.2
76.08
41.4

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000048066
4192752 - 4322660
129909