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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4219399_4219786_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4219399 - 4219786
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TAAATACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCCTCTTTACA
Flanking Amino Acid:
VSAPSLHGKSPEELTLLLIR
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.1
0.41
1
60
41.2
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
62.5
0.39
1.6
72.39
39.3

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000019707
4192752 - 4322660
129909