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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4219874_4221924_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4219874 - 4221924
Intron Length:
2051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
TGGCTTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GGCTTCTTACAG
Flanking Amino Acid:
PRKIRSHAVKSSAHVDRRSM
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79
0.65
0.9
72.4
37.8
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
47.7
-0.3
1.8
49.53
44.1

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352