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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4226402_4228439_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4226402 - 4228439
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAACAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
ALMQTRSSLKRENEKVDQQA
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.6
1.12
0.8
80.1
34.5
Major BPS
44.5
-0.3
1
46.6
34.6
Major PPT
83.3
0.75
0.7
81.1
23.9
Minor 5ss
30.2
-2.3
3.8
41.6
45
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000019707
4192752 - 4322660
129909