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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4228619_4235265_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4228619 - 4235265
Intron Length:
6647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTA
5'SS Class:
major
3'SS Sequence:
ATTTTGGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
DRINRKFSFKAVHTGMRAYI
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69.2
38
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
69.8
0.45
1.1
65
45.2
Minor 5ss
38.6
-1.3
3.6
55.4
48.8
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000035209
4191041 - 4327076
136036