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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4235367_4236550_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4235367 - 4236550
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTACTTTACA
Flanking Amino Acid:
LADYCLFYYKDSREESVLGS
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.9
0.9
0.7
84.3
30.3
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
71
0.65
1.8
84.87
34.2

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000019707
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909