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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4241659_4248392_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4241659 - 4248392
Intron Length:
6734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAG
U12 Branch Point Sequence:
TGTGCTTTAGAG
Flanking Amino Acid:
PENIEFILHEELNSPMSKQQ
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
55.2
0.13
1.6
60.7
45.9
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
38.7
-1.3
2.8
48
41.7
Minor BPS
49.1
-0.2
1.8
57.2
44.3

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000035209
4191041 - 4327076
136036
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000032075
4192752 - 4327076
134325
ENSAPLT00000044368
4192752 - 4299103
106352
ENSAPLT00000009300
4192752 - 4279793
87042
ENSAPLT00000042205
4192752 - 4322660
129909