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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4248477_4298816_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4248477 - 4298816
Intron Length:
50340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
QEDCLAVRGSCHNQQTTSFR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044368
4192752 - 4299103
106352