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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4248477_4321680_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4248477 - 4321680
Intron Length:
73204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
FSEEGASYFIDHNQQTTSFR
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
PLEKHA7
Ensembl Gene ID:
ENSAPLG00000008901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036589
4190988 - 4322660
131673
ENSAPLT00000048066
4192752 - 4322660
129909
ENSAPLT00000042205
4192752 - 4322660
129909