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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42525644_42640416_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42525644 - 42640416
Intron Length:
114773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
GLGDFLQLHIEQGKIGVVFN
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
78.7
29.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
35.7
-1.6
2.9
44
38.6
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000603
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036591
42415152 - 42774834
359683
ENSAPLT00000000655
42415152 - 42774834
359683
ENSAPLT00000043420
42415152 - 42774834
359683