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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42640589_42661591_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42640589 - 42661591
Intron Length:
21003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATACT
5'SS Class:
major
3'SS Sequence:
TTAAACTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAC
Flanking Amino Acid:
SWPVNEHYPTGNTDSERFQM
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.9
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.1
0.34
1.1
63.8
41.4
Minor 5ss
36.7
-1.5
3.1
52.4
44.2
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000603
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036591
42415152 - 42774834
359683
ENSAPLT00000000655
42415152 - 42774834
359683
ENSAPLT00000043420
42415152 - 42774834
359683