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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42666616_42667910_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42666616 - 42667910
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
CCCCCTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACCCCCTTCACT
Flanking Amino Acid:
SRPATTTTKIGRQLTIFNTQ
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.6
36.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
64.6
0.33
0.8
58.1
31.7
Minor 5ss
39.8
-1.1
2.9
48.2
42.1
Minor BPS
59.1
0.37
1.8
71.5
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000603
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043420
42415152 - 42774834
359683