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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42668219_42739573_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42668219 - 42739573
Intron Length:
71355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCACATGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTGCCCTTCACA
Flanking Amino Acid:
RKNRSPPSIQTTDDIVSSAE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
66.5
0.37
1
58.7
41.5
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
60.3
0.32
1.8
68.47
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000603
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036591
42415152 - 42774834
359683
ENSAPLT00000000655
42415152 - 42774834
359683
ENSAPLT00000043420
42415152 - 42774834
359683