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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42827774_42828287_F

Intron Information:

Intron Rank:
135510
Intron Class:
major
Intron Phase:
Intron Coordinates:
42827774 - 42828287
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCACA
5'SS Class:
major
3'SS Sequence:
TCCATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
66
39.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.6
0.8
0.8
83.7
31.2
Minor 5ss
45.9
-0.4
2.5
55.1
44.1
Minor BPS
73.7
0.82
1.4
86.11
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022916
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040115
42827344 - 42829020
1677