Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42987717_42993999_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42987717 - 42993999

Intron Length:

6283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTATTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

AGATGCTTAATT

Flanking Amino Acid:

LSTSLLSESGSHLKRMVPFD

Intron Amino Acid Position:

1057

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

85.6

30.4

Major BPS

79.1

0.72

69.3

38.4

Major PPT

82.4

0.73

0.7

81.1

29.7

Minor 5ss

44.2

-0.6

2.9

66.4

38.5

Minor BPS

63.9

0.52

1.8

76.16

40.4

Associated Gene:

Gene:

CEP128

Ensembl Gene ID:

ENSAPLG00000000960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019500

42987610 - 43095799

108190

ENSAPLT00000001380

42987610 - 43095799

108190