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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42993342_42993999_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42993342 - 42993999
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
ATTTCTTGAATA
Flanking Amino Acid:
LSTSLLSESGSHQISAHGYE
Intron Amino Acid Position:
1065

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
71.8
0.68
1.3
78.6
31.3

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000947
42993262 - 43095799
102538