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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_42998145_43000202_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42998145 - 43000202
Intron Length:
2058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
AATACGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATCATTTAAAC
Flanking Amino Acid:
SLLEDFKDTEESHCRREKIE
Intron Amino Acid Position:
991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
79.6
28
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
65.6
0.35
1
55.2
44.7
Minor 5ss
31.4
-2.1
3
40.8
39.4
Minor BPS
53.2
0.08
1.6
62.29
35.9

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538
ENSAPLT00000019500
42987610 - 43095799
108190
ENSAPLT00000001380
42987610 - 43095799
108190