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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43047534_43049914_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43047534 - 43049914
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTCTA
5'SS Class:
major
3'SS Sequence:
CACTACTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCCTTCACT
Flanking Amino Acid:
FSRDSMEKFKAISLIPTVLN
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
73.6
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.2
0.32
0.8
57.4
32.7
Minor 5ss
39.6
-1.2
3
50.6
39.9
Minor BPS
77.6
0.95
1.7
91.7
38.1

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538
ENSAPLT00000019500
42987610 - 43095799
108190
ENSAPLT00000001380
42987610 - 43095799
108190