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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43070914_43072120_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43070914 - 43072120
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
ACACGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTTGTTAAAC
Flanking Amino Acid:
EGSREALLHQIEDLRSQLLR
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
66.5
0.37
1
61.5
43.8
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
62.5
0.37
2.1
79.08
36.2

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019500
42987610 - 43095799
108190
ENSAPLT00000001380
42987610 - 43095799
108190
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538