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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43072196_43073642_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43072196 - 43073642
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTGTAATGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATAATT
Flanking Amino Acid:
LEKYESEKKRLEQELEQSRK
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
55.8
0.13
1.2
56.8
41.7
Minor 5ss
41.4
-1
3.1
55.9
42.3
Minor BPS
68.5
0.66
1.6
84.17
37

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001380
42987610 - 43095799
108190
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538
ENSAPLT00000019500
42987610 - 43095799
108190