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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43073730_43081089_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43073730 - 43081089
Intron Length:
7360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACTTTAAAG
Flanking Amino Acid:
LGQMSIQLQEALKKRDAKAA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.8
0.56
1
74.9
33.5
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
62.8
0.26
1.5
65.19
42.6

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019500
42987610 - 43095799
108190
ENSAPLT00000001380
42987610 - 43095799
108190
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538