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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43089957_43091988_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43089957 - 43091988
Intron Length:
2032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTACTTTAATT
Flanking Amino Acid:
FVNEADNLDQLHSFHQSLRD
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.4
0.75
0.8
76.7
36.2
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
76
0.89
1.2
85.44
34.7

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001380
42987610 - 43095799
108190
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538
ENSAPLT00000019500
42987610 - 43095799
108190