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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43093163_43093584_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43093163 - 43093584
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
AATTTCTTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ATTTCAGTAAAA
Flanking Amino Acid:
NKEQTEAIATLKETLEQSIG
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.1
61.7
38.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.4
0.66
0.8
73.8
35.8
Minor 5ss
37.1
-1.5
3
52.9
44.1
Minor BPS
50.4
0.01
2.3
72.59
38.8

Associated Gene:

Gene:
CEP128
Ensembl Gene ID:
ENSAPLG00000000960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019500
42987610 - 43095799
108190
ENSAPLT00000001380
42987610 - 43095799
108190
ENSAPLT00000000950
42987708 - 43095799
108092
ENSAPLT00000000947
42993262 - 43095799
102538